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Memory/CPU Monitor

Shows the used and available memory for OmicsBox. In blue the CPU utilisation of the last minute can be seen.

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Application Messages

Shows general application message as well as summary information of specific job executions.

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Welcome Message

A window which provides information about application updates and new features.

Progress

This tab provides process information of any job execution in OmicsBox. Each job can be cancelled as well as a more detailed message tab can be opened.

File Manager

Cloud Usage

The Cloud Usage provides information about the number of consumed/ recharged Cloud Units or processed sequences and success jobs.

The Excel icon on the top right in Figure 1 allows exporting the table in csv format.

The Filter option allows to limit the table to a specific rage of dates.

The following features that run on the BioBam Bioinformatics Cloud Platform are:

  • Functional Analysis: CloudIPS (paid), CloudBlast (paid), GO Mapping, EggNOG, Annotation
  • Transcriptomics: Trinity*, BUSCO, TransDecoder, CD-HIT, STAR*, BWA*, RSEM*, EdgeR, maSigPro, NOISeq
  • Metagenomics: Kraken, MEGAHIT, meta-SPAdes, FragGeneScan, Prodigal, PfamScan, EggNOG Mapper
  • Genome Analysis: Flye,* ABySS*, SPAdes*, Pilon*, BWA*, RepeatMasker, Augustus, Glimmer

  • Apps: CPAT, PSORTb, MLST

  • These algorithms make use of free cloud computation resources. This is an introductory offer and may change in a future release depending on the overall resource consumption of these features.

Figure 1: Cloud Usage